Monster Cards
Black Luster Soldier - Envoy of the Beginning
Chaos Emperor Dragon - Envoy of the End
Cyber-Stein
Cyber Jar
Dark Magician of Chaos
Dark Strike Fighter
Destiny Hero - Disk Commander 
Fiber Jar
Magical Scientist
Magician of Faith
Makyura the Destructor 
Rescue Cat  (From Limited)
Sinister Serpent
Substitoad (From Unlimited)
Thousand-Eyes Restrict
Tribe-Infecting Virus
Tsukuyomi
Victory Dragon
Witch of the Black Forest
Yata-Garasu

Monster Cards

Blackwing - Gale the Whirlwind 
Brionac, Dragon of the Ice Barrier
Card Trooper
Dark Armed Dragon
Elemental Hero Stratos
Exodia the Forbidden One

Gladiator Beast Bestiari
Gorz the Emissary of Darkness

Goyo Guardian
Left Arm of the Forbidden One
Left Leg of the Forbidden One
Lumina, Lightsworn Summoner
Marshmallon 
Mezuki 
Mind Master
Morphing Jar
Necroface 
Necro Gardna
Neo-Spacian Grand Mole
Night Assailant
Plaguespreader Zombie
Right Arm of the Forbidden One
Right Leg of the Forbidden One
Sangan
Spirit Reaper
Summoner Monk
Tragoedia 
Trishula, Dragon of the Ice Barrier (From Unlimited)

Spell Cards

Advanced Ritual Art
Allure of Darkness
Black Whirlwind (From Semi-Limited)
Burial from a Different Dimension
Card Destruction
Charge of the Light Brigade
Cold Wave 
Dark Hole (From Forbidden)
Destiny Draw
Emergency Teleport
Foolish Burial
Future Fusion
Giant Trunade
Infernity Launcher (From Unlimited)
Level Limit - Area B
Limiter Removal
Megamorph
Mind Control
Monster Gate
Monster Reborn (From Forbidden)
One for One
Overload Fusion
Reasoning 
Reinforcement of the Army
Scapegoat
Swords of Revealing Light

Trap Cards

Call of the Haunted
Ceasefire 
Gravity Bind
Magical Explosion
Mind Crush 
Mirror Force
Return from the Different Dimension 
Royal Oppression (From Semi-Limited)
Solemn Judgment
The Transmigration Prophecy
Torrential Tribute
Trap Dustshoot 
Wall of Revealing Light

III. Semi-Limited Cards

You can only use two of these cards in your Deck, Fusion or Side Deck:  

Monster

CardsChaos Sorcerer (From Limited)
Dandylion
Demise, King of Armageddon
Destiny Hero - Malicious
Dewloren, Tiger King of the Ice Barrier (TCG; From Unlimited)
Honest 
Judgment Dragon
Lonefire Blossom 
Snipe Hunter (From Limited)
Spell CardsChain Strike
Gold Sarcophagus 
Magical Stone Excavation
Mystical Space Typhoon (From Limited)
Trap CardsBottomless Trap Hole
Magic Cylinder (From Limited)
Ojama Trio (From Limited)
Skill Drain 
Ultimate Offering

IV. No Longer Limited

Black Rose Dragon (From Limited)
Cyber Dragon  (From Semi-Limited)
Goblin Zombie (From Semi-Limited)
Royal Decree (From Semi-Limited)
Treeborn Frog (From Semi-Limited)
United We Stand (From Semi-Limited)